Publikacje

Spring Model–chromatin modeling tool based on OpenMM
M Kadlof, J Rozycka, D Plewczynski
Methods 181, 62-69

Computational modelling of three-dimensional genome structure
D Plewczynski, M Kadlof
Methods (San Diego, Calif.)

Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization
P Trzaskoma, B Ruszczycki, B Lee, KK Pels, K Krawczyk, G Bokota, ...
Nature communications 11 (1), 1-9

Ultrastructural Visualization of 3D Chromatin Folding Using Serial Block-Face Scanning Electron Microscopy and In Situ Hybridization (3D-EMISH)
P Trzaskoma, B Ruszczycki, B Lee, KK Pels, K Krawczyk, G Bokota, ...
bioRxiv

Machine learning polymer models of three-dimensional chromatin organization in human lymphoblastoid cells
Z Al Bkhetan, M Kadlof, A Kraft, D Plewczynski
Methods 166, 83-90

GapRepairer: a server to model a structural gap and validate it using topological analysis
AI Jarmolinska, M Kadlof, P Dabrowski-Tumanski, JI Sulkowska
Bioinformatics 34 (19), 3300-3307

Complex lasso: new entangled motifs in proteins
W Niemyska, P Dabrowski-Tumanski, M Kadlof, E Haglund, P Sułkowski, ...
Scientific reports 6 (1), 1-10

3D-GNOME: an integrated web service for structural modeling of the 3D genome
P Szalaj, PJ Michalski, P Wróblewski, Z Tang, M Kadlof, G Mazzocco, ...
Nucleic acids research 44 (W1), W288-W293